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Fix conda vs source issues.

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Antreas Antoniou 2018-09-25 12:28:15 +01:00 committed by GitHub
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notes/environment-set-up.md
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@ -58,7 +58,9 @@ definition in `.bashrc`. As the DICE bash start-up mechanism differs from the st
On DICE, append the Miniconda binaries directory to `PATH` in manually in `~/.benv` using On DICE, append the Miniconda binaries directory to `PATH` in manually in `~/.benv` using
``` ```
echo "export PATH=\""\$PATH":$HOME/miniconda3/bin\"" >> ~/.benv echo ". /afs/inf.ed.ac.uk/user/s14/s1473470/miniconda3/etc/profile.d/conda.sh" >> ~/.bashrc
echo ". /afs/inf.ed.ac.uk/user/s14/s1473470/miniconda3/etc/profile.d/conda.sh" >> ~/.benv
``` ```
For those who this appears a bit opaque to and want to know what is going on see here <sup id="a1">[1](#f1)</sup>. For those who this appears a bit opaque to and want to know what is going on see here <sup id="a1">[1](#f1)</sup>.
@ -69,20 +71,12 @@ We now need to `source` the updated `~/.benv` so that the `PATH` variable in the
source ~/.benv source ~/.benv
``` ```
From the next time you log in all future terminal sessions should have the updated `PATH` loaded by default. From the next time you log in all future terminal sessions should have conda readily available via:
To make sure that your conda installation will be available even from an ssh entry from a remote laptop please also do:
``` ```
nano ~/.bashrc conda activate
``` ```
This opens the .bashrc file that is sourced whenever one starts a terminal.
Append at the end
```
source ~/.benv
```
## 3. Creating the Conda environment ## 3. Creating the Conda environment